PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC961_p8
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 90aa    MW: 10149.4 Da    PI: 8.5255
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC961_p8genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.3e-0917581454
               HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
               d+iN+ + +L++llP+   + +s K+s + +L+++++YI++L
  RrC961_p8 17 DQINDLIIKLQQLLPElGNSRRSDKVSASRVLQETCNYIRNL 58
               79**************666999999***************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.379358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-91772IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.44E-51762No hitNo description
PfamPF000106.9E-71758IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-101777IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MSGRRSRSRP SSGISEDQIN DLIIKLQQLL PELGNSRRSD KVSASRVLQE TCNYIRNLHR  60
EVDDLSERLS ELLANTDTAQ AALIRSLLTQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2273958e-84AK227395.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-05-N07.
GenBankAY0882868e-84AY088286.1 Arabidopsis thaliana clone 519 mRNA, complete sequence.
GenBankBT0030468e-84BT003046.1 Arabidopsis thaliana At1g74500 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013726392.11e-49PREDICTED: transcription factor PRE3-like
RefseqXP_013681754.11e-49PREDICTED: transcription factor PRE3-like
RefseqXP_013591036.11e-49PREDICTED: transcription factor PRE3-like
SwissprotQ9CA648e-46PRE3_ARATH; Transcription factor PRE3
TrEMBLA0A078D9A32e-49A0A078D9A3_BRANA; BnaA07g22200D protein
TrEMBLA0A0D3CWN22e-49A0A0D3CWN2_BRAOL; Uncharacterized protein
STRINGBra003797.1-P9e-48(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74500.12e-45activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1